Add Skill: local-document-research-with-traceable-citations

Extracted from: https://github.com/0verL1nk/PaperSage.git
Score: 1.0

skills/blacknode-text-concatenation-workflow/SKILL.md

@@ -1,67 +0,0 @@
----
-name: blacknode-text-concatenation-workflow
-version: 1.0.0
-description: Concatenate two text strings using a Blacknode graph of Text, Concat,
-  and Output nodes.
-inputs:
-- 'text_a: string'
-- 'text_b: string'
-steps:
-- Initialize a Blacknode Graph object.
-- Add a Text node with parameter value set to text_a.
-- Add a second Text node with parameter value set to text_b.
-- Add a Concat node (no parameters required).
-- Add an Output node (no parameters required).
-- Connect the 'value' output port of the first Text node to the 'a' input port of
-  the Concat node.
-- Connect the 'value' output port of the second Text node to the 'b' input port of
-  the Concat node.
-- Connect the 'value' output port of the Concat node to the 'value' input port of
-  the Output node.
-- Evaluate the graph by cooking the Output node's 'value' port to obtain the concatenated
-  result.
-outputs:
-- 'concatenated_text: string'
-tags: []
-metadata:
-  source_repo: https://github.com/temiroff/Blacknode.git
-  extracted_at: ''
-  confidence: 0.95
----
-
-# blacknode-text-concatenation-workflow
-
-Concatenate two text strings using a Blacknode graph of Text, Concat, and Output nodes.
-
-## Steps
-
-1. Initialize a Blacknode Graph object.
-2. Add a Text node with parameter value set to text_a.
-3. Add a second Text node with parameter value set to text_b.
-4. Add a Concat node (no parameters required).
-5. Add an Output node (no parameters required).
-6. Connect the 'value' output port of the first Text node to the 'a' input port of the Concat node.
-7. Connect the 'value' output port of the second Text node to the 'b' input port of the Concat node.
-8. Connect the 'value' output port of the Concat node to the 'value' input port of the Output node.
-9. Evaluate the graph by cooking the Output node's 'value' port to obtain the concatenated result.
-
-## Inputs
-
-- text_a: string
-- text_b: string
-
-## Outputs
-
-- concatenated_text: string
-
-## Failure Modes
-
-- Node types 'Text', 'Concat', or 'Output' not registered in Blacknode runtime
-- Port name mismatches during edge creation
-- Missing input values causing empty concatenation
-- Graph evaluation error if cycles or disconnected required ports
-
-## Source
-
-Extracted from: [https://github.com/temiroff/Blacknode.git](https://github.com/temiroff/Blacknode.git)
-Confidence: 0.95

skills/blacknode-text-concatenation-workflow/commands.md

@@ -1,6 +0,0 @@
-# Commands: blacknode-text-concatenation-workflow
-
-## Available Commands
-
-- `/skill blacknode-text-concatenation-workflow` — Load this skill
-- `/run blacknode-text-concatenation-workflow` — Execute workflow

skills/blacknode-text-concatenation-workflow/examples.md

@@ -1,10 +0,0 @@
-# Examples: blacknode-text-concatenation-workflow
-
-## Usage Example
-
-```python
-# How to use this skill
-# Inputs: text_a: string, text_b: string
-# Process: Initialize a Blacknode Graph object. → Add a Text node with parameter value set to text_a. → Add a second Text node with parameter value set to text_b.
-# Outputs: concatenated_text: string
-```

skills/blacknode-text-concatenation-workflow/metadata.json

@@ -1,33 +0,0 @@
-{
-  "name": "blacknode-text-concatenation-workflow",
-  "version": "1.0.0",
-  "goal": "Concatenate two text strings using a Blacknode graph of Text, Concat, and Output nodes.",
-  "inputs": [
-    "text_a: string",
-    "text_b: string"
-  ],
-  "steps": [
-    "Initialize a Blacknode Graph object.",
-    "Add a Text node with parameter value set to text_a.",
-    "Add a second Text node with parameter value set to text_b.",
-    "Add a Concat node (no parameters required).",
-    "Add an Output node (no parameters required).",
-    "Connect the 'value' output port of the first Text node to the 'a' input port of the Concat node.",
-    "Connect the 'value' output port of the second Text node to the 'b' input port of the Concat node.",
-    "Connect the 'value' output port of the Concat node to the 'value' input port of the Output node.",
-    "Evaluate the graph by cooking the Output node's 'value' port to obtain the concatenated result."
-  ],
-  "outputs": [
-    "concatenated_text: string"
-  ],
-  "failure_modes": [
-    "Node types 'Text', 'Concat', or 'Output' not registered in Blacknode runtime",
-    "Port name mismatches during edge creation",
-    "Missing input values causing empty concatenation",
-    "Graph evaluation error if cycles or disconnected required ports"
-  ],
-  "confidence": 0.95,
-  "explanation": "Extracted from examples/converted_text_pipeline.py and referenced templates/text-pipeline.json in the Blacknode repo. This workflow is a foundational, dependency-free pattern for building directed graphs of typed nodes and is applicable to any simple data combination task.",
-  "source_repo": "https://github.com/temiroff/Blacknode.git",
-  "score": 1.0
-}

skills/local-document-research-with-traceable-citations/SKILL.md

@@ -0,0 +1,82 @@
+---
+name: local-document-research-with-traceable-citations
+version: 1.0.0
+description: Enable users to import local documents, asynchronously process them into
+  an indexed knowledge base, and obtain AI-generated answers that cite specific page
+  locations and OCR evidence.
+inputs:
+- Local document files (PDF, DOCX, PPTX, XLSX, images, TXT)
+- Configured LLM API endpoint and keys (via .env or settings)
+- Optional web search service config if enabled
+- Local OCR model cache (downloaded on first use)
+steps:
+- Import documents into a project; files are queued for asynchronous processing.
+- Convert non-PDF formats (DOCX, PPTX, XLSX) to PDF using native Office or LibreOffice
+  fallback.
+- Run OCR (PaddleOCR) on PDF pages/images to extract text, page numbers, polygons,
+  and confidence scores.
+- Chunk text and generate embeddings; publish to LanceDB hybrid index (dense vector
+  + full-text) only when fully processed.
+- User starts a research session or branch; Leader agent analyzes query.
+- Hybrid RAG retrieves candidate chunks from ready documents; dynamic material scope
+  ensures no half-indexed docs.
+- Leader delegates tasks to sub-agents (researcher, reviewer, writer) via constrained
+  task capability; each delegation logs start, completion, duration, and evidence.
+- Generate answer that references only actually used evidence; citations include document
+  ID, page, coordinates.
+- User clicks citation to open original document and view highlighted OCR location.
+outputs:
+- Project with indexed document library (SQLite metadata + LanceDB vectors)
+- AI answers with verifiable citations to source pages
+- Evidence preview with page image and OCR highlight polygons
+- Persistent session history, branches, and long-term memory
+tags: []
+metadata:
+  source_repo: https://github.com/0verL1nk/PaperSage.git
+  extracted_at: ''
+  confidence: 0.85
+---
+
+# local-document-research-with-traceable-citations
+
+Enable users to import local documents, asynchronously process them into an indexed knowledge base, and obtain AI-generated answers that cite specific page locations and OCR evidence.
+
+## Steps
+
+1. Import documents into a project; files are queued for asynchronous processing.
+2. Convert non-PDF formats (DOCX, PPTX, XLSX) to PDF using native Office or LibreOffice fallback.
+3. Run OCR (PaddleOCR) on PDF pages/images to extract text, page numbers, polygons, and confidence scores.
+4. Chunk text and generate embeddings; publish to LanceDB hybrid index (dense vector + full-text) only when fully processed.
+5. User starts a research session or branch; Leader agent analyzes query.
+6. Hybrid RAG retrieves candidate chunks from ready documents; dynamic material scope ensures no half-indexed docs.
+7. Leader delegates tasks to sub-agents (researcher, reviewer, writer) via constrained task capability; each delegation logs start, completion, duration, and evidence.
+8. Generate answer that references only actually used evidence; citations include document ID, page, coordinates.
+9. User clicks citation to open original document and view highlighted OCR location.
+
+## Inputs
+
+- Local document files (PDF, DOCX, PPTX, XLSX, images, TXT)
+- Configured LLM API endpoint and keys (via .env or settings)
+- Optional web search service config if enabled
+- Local OCR model cache (downloaded on first use)
+
+## Outputs
+
+- Project with indexed document library (SQLite metadata + LanceDB vectors)
+- AI answers with verifiable citations to source pages
+- Evidence preview with page image and OCR highlight polygons
+- Persistent session history, branches, and long-term memory
+
+## Failure Modes
+
+- OCR quality low for scanned images leading to poor extraction
+- Missing Office/LibreOffice causes conversion failure for Office docs
+- Interrupted indexing leaves documents unpublished and excluded from retrieval
+- LLM API outage or misconfiguration yields no answer
+- Citation coordinates mismatch due to chunk drift
+- Sub-agent recursion if constraints not enforced
+
+## Source
+
+Extracted from: [https://github.com/0verL1nk/PaperSage.git](https://github.com/0verL1nk/PaperSage.git)
+Confidence: 0.85

skills/local-document-research-with-traceable-citations/commands.md

@@ -0,0 +1,6 @@
+# Commands: local-document-research-with-traceable-citations
+
+## Available Commands
+
+- `/skill local-document-research-with-traceable-citations` — Load this skill
+- `/run local-document-research-with-traceable-citations` — Execute workflow

skills/local-document-research-with-traceable-citations/examples.md

@@ -0,0 +1,10 @@
+# Examples: local-document-research-with-traceable-citations
+
+## Usage Example
+
+```python
+# How to use this skill
+# Inputs: Local document files (PDF, DOCX, PPTX, XLSX, images, TXT), Configured LLM API endpoint and keys (via .env or settings), Optional web search service config if enabled, Local OCR model cache (downloaded on first use)
+# Process: Import documents into a project; files are queued for asynchronous processing. → Convert non-PDF formats (DOCX, PPTX, XLSX) to PDF using native Office or LibreOffice fallback. → Run OCR (PaddleOCR) on PDF pages/images to extract text, page numbers, polygons, and confidence scores.
+# Outputs: Project with indexed document library (SQLite metadata + LanceDB vectors), AI answers with verifiable citations to source pages, Evidence preview with page image and OCR highlight polygons, Persistent session history, branches, and long-term memory
+```

skills/local-document-research-with-traceable-citations/metadata.json

@@ -0,0 +1,40 @@
+{
+  "name": "local-document-research-with-traceable-citations",
+  "version": "1.0.0",
+  "goal": "Enable users to import local documents, asynchronously process them into an indexed knowledge base, and obtain AI-generated answers that cite specific page locations and OCR evidence.",
+  "inputs": [
+    "Local document files (PDF, DOCX, PPTX, XLSX, images, TXT)",
+    "Configured LLM API endpoint and keys (via .env or settings)",
+    "Optional web search service config if enabled",
+    "Local OCR model cache (downloaded on first use)"
+  ],
+  "steps": [
+    "Import documents into a project; files are queued for asynchronous processing.",
+    "Convert non-PDF formats (DOCX, PPTX, XLSX) to PDF using native Office or LibreOffice fallback.",
+    "Run OCR (PaddleOCR) on PDF pages/images to extract text, page numbers, polygons, and confidence scores.",
+    "Chunk text and generate embeddings; publish to LanceDB hybrid index (dense vector + full-text) only when fully processed.",
+    "User starts a research session or branch; Leader agent analyzes query.",
+    "Hybrid RAG retrieves candidate chunks from ready documents; dynamic material scope ensures no half-indexed docs.",
+    "Leader delegates tasks to sub-agents (researcher, reviewer, writer) via constrained task capability; each delegation logs start, completion, duration, and evidence.",
+    "Generate answer that references only actually used evidence; citations include document ID, page, coordinates.",
+    "User clicks citation to open original document and view highlighted OCR location."
+  ],
+  "outputs": [
+    "Project with indexed document library (SQLite metadata + LanceDB vectors)",
+    "AI answers with verifiable citations to source pages",
+    "Evidence preview with page image and OCR highlight polygons",
+    "Persistent session history, branches, and long-term memory"
+  ],
+  "failure_modes": [
+    "OCR quality low for scanned images leading to poor extraction",
+    "Missing Office/LibreOffice causes conversion failure for Office docs",
+    "Interrupted indexing leaves documents unpublished and excluded from retrieval",
+    "LLM API outage or misconfiguration yields no answer",
+    "Citation coordinates mismatch due to chunk drift",
+    "Sub-agent recursion if constraints not enforced"
+  ],
+  "confidence": 0.85,
+  "explanation": "The README outlines a clear pipeline from document import to cited answer with evidence location, which is a reusable pattern for local-first RAG applications requiring traceability.",
+  "source_repo": "https://github.com/0verL1nk/PaperSage.git",
+  "score": 1.0
+}

skills/local-document-research-with-traceable-citations/tests.md

@@ -1,4 +1,4 @@
-# Tests: blacknode-text-concatenation-workflow
+# Tests: local-document-research-with-traceable-citations
 
 ## Test Checklist